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The Rise of Somatic Mutations During Aging and the Tools to Study Them

Scott Kennedy, PhD
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Friday, October 25, 2019
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11:45 am - 1:00 pm
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Scott Kennedy, PhD, University of Washington
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Duke University Program in Environmental Health & Toxicology Fall Seminar Series (Pharm 847-S/ENV 847-S)

Spontaneously occurring mutations accumulate in somatic cells throughout a person's lifetime. Despite proficient DNA repair mechanisms, somatic cells accumulate mutations during development and aging, generating cells with different genotypes within the same individual, a phenomenon known as somatic mosaicism. While the existence of somatic mosaicism has long been recognized, their role in aging and disease has been difficult to study due to an absence of methods capable of sensitively detecting these rare mutations. To overcome this limitation, we previously developed a massively parallel sequencing methodology, termed Duplex Sequencing, capable of detecting one mutation in >50 million sequenced bases. Using this method, we have begun to explore the intersection between aging and somatic mutations occurring in mitochondrial and nuclear genomes in a variety of different diseases and model systems. In the case of mitochondrial DNA (mtDNA), we have noted a significant increase in point mutations in mtDNA with age that varies dramatically between different tissues. Surprisingly, the frequency of G -> T mutations, considered the hallmark of oxidative damage to DNA, are not the predominant mutation type and does not significantly increase with age, but does show variability between tissue. In addition to mtDNA, our studies have begun to include somatic mutations in nuclear DNA, with an emphasis on mutations in cancer-associated genes.

Contact: Alexis Sharp