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Data Analysis for 10x Visium Spatial Transcriptomics Data

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Thursday, March 23, 2023
10:00 am - 12:00 pm
Mengyi (Miko) Liu
Computational Biology Workshop

As spatial transcriptomics becomes a more prevalent tool in cancer, neurology studies and more, do you
wonder how to analyze the data to make sense of the biology?
This workshop includes three hands-on sessions (2 hours each), that will:
• Introduce the 10x Visium platform: experimental procedures, applications, advantage & disadvantage
compared to other technologies
• Teach you step-by-step the analysis for Visium data: preprocessing, clustering, how to use Loupe browser
• Other downstream analysis: integration with single-cell data, using deconvolution tools to find cell types
and cell-cell interactions
After the workshop, you'll know how to approach a new Visium dataset when you want to analyze one.